Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SKCM | rs6580923 | chr12:53358352 | A/G | 4.59E-5 | 101 | 16.58 | 12.68 | 13 | KM Plot |
| SKCM | rs6583621 | chr8:143451185 | G/A | 7.21E-5 | 100 | 15.38 | 15.57 | 10.87 | KM Plot |
| SKCM | rs66906469 | chr7:127678741 | G/GTT | 3.86E-5 | 101 | 14.8 | 16.28 | 10.52 | KM Plot |
| SKCM | rs66968227 | chr11:64070930 | T/C | 1.39E-10 | 98 | 14.8 | 19.85 | 6.83 | KM Plot |
| SKCM | rs674297 | chr11:64549514 | C/T | 6.62E-7 | 100 | 14.73 | 15.73 | 8.8 | KM Plot |
| SKCM | rs680273 | chr11:64539635 | C/G | 5.48E-7 | 101 | 14.8 | 15.63 | 8.8 | KM Plot |
| SKCM | rs682619 | chr15:59098773 | T/C | 8.87E-5 | 97 | 14.8 | 20.47 | 13.5 | KM Plot |
| SKCM | rs683841 | chr11:64548581 | G/T | 6.56E-7 | 100 | 14.8 | 15.68 | 8.8 | KM Plot |
| SKCM | rs684720 | chr11:64548429 | C/G | 6.56E-7 | 100 | 14.8 | 15.68 | 8.8 | KM Plot |
| SKCM | rs6874209 | chr5:138460 | A/G | 2.07E-5 | 101 | 14.7 | 15.75 | 9.32 | KM Plot |
| SKCM | rs6888170 | chr5:1641826 | C/T | 4.46E-5 | 96 | 15.13 | 13.77 | 9 | KM Plot |
| SKCM | rs6983488 | chr8:143455701 | C/A | 8.8E-5 | 98 | 16.23 | 15.57 | 10.87 | KM Plot |
| SKCM | rs7079700 | chr10:45478681 | G/T | 1.55E-6 | 101 | 8.8 | 14.7 | 15.47 | KM Plot |
| SKCM | rs71049659 | chr11:64548806 | AAC/A | 6.56E-7 | 100 | 8.8 | 15.63 | 14.85 | KM Plot |
| SKCM | rs71082214 | chr3:35860144 | CT/C | 6.59E-5 | 97 | 14.28 | 20.57 | 9.7 | KM Plot |